Sample Data
This folder contains minimal demo files for local testing.
Iris Dataset
This is the classic Iris flower dataset, a well-known benchmark for classification tasks. It contains 150 samples from three species of Iris flowers (Setosa, Versicolour, and Virginica), with four features measured for each sample: sepal length, sepal width, petal length, and petal width.
DownloadGene Dataset
This is a sample gene expression matrix, suitable for bioinformatics analyses like differential expression or clustering. The filename indicates it contains data for 500 genes across 4 samples, with the expression values being z-score normalized.
DownloadDysregnet Dataset
This collection of files represents a multi-faceted dataset for a Dysregulated Gene Network (Dysregnet) analysis. This type of analysis is typically used to study differences in gene regulation between two conditions (e.g., case vs. control).
Clinical: clinical.csv contains clinical information or phenotypes for the samples.
Expression: expr.csv, expr_case.csv, and expr_control.csv are gene expression matrices for all samples combined, and split into case and control groups, respectively.
Network: grn.csv defines a Gene Regulatory Network (GRN), specifying known interactions between transcription factors and their target genes.
Metadata: meta.csv contains metadata about the samples or the experimental design.
Interactions: HTRIdb_data.csv provides prior knowledge on transcription factor-gene interactions, likely sourced from the Human Transcriptional Regulation Interactions database (HTRIdb).
Clinical CSV Download
Expr CSV Download
Expre case CSV Download
Expr control CSV Download
GRN CSV Download
Meta CSV Download
HTRIdb CSV Download
Spycone Dataset
This dataset is designed for the time-series analysis of gene expression, possibly within the 'Spycone' analysis framework. The files suggest a study related to viral infections like influenza and rhinovirus.
Time-Series Data: flu_ts.csv contains time-series gene expression data, likely from an influenza infection study.
Gene Lists: gene_list.csv and symbs.csv provide lists of gene identifiers or symbols used in the analysis.
Normalized Data: normticonerhino_wide.csv is a normalized, wide-format data table, possibly from a rhinovirus infection experiment.
Flu TS CSV Download
Gene list CSV Download
normticonerhino_wide CSV Download
Symbs CSV Download